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This article provides the best description of the SAMI2 model. However, the E x B transport scheme used in the open source version of SAMI2 is based on a nonothogonal Eulerian grid which is not described in this article. The original version of SAMI2, described in this paper, used a Lagrangian mesh for cross-field transport.

Huba, J.D., G. Joyce, and J.A. Fedder,
Sami2 is Another Model of the Ionosphere (SAMI2): A new low-latitude ionosphere model,
J. Geophys. Res., 105, 23,035, 2000.

Huba, J.D., G. Joyce, and J.A. Fedder,
The formation of an electron hole in the topside equatorial ionosphere,
Geophys. Res. Lett., 27, 181, 2000.

Huba, J.D., G. Joyce, and J.A. Fedder,
Ion sound waves in the topside low latitude ionosphere,
Geophys. Res. Lett., 27, 3181, 2000.

Huba, J.D., G. Joyce, K. Dymond, S.A. Budzien, S.E. Thonnard, R. McCoy, and J.A. Fedder,
Comparison of O+ density from ARGOS LORAAS data analysis and SAMI2 model results,
Geophys. Res. Lett., 29, 10.1029/2001GL013089, 2002.

Meier, R.R., H.P. Warren, A.C. Nicholas, J. Bishop, J.D. Huba, D.P. Drob, J.L. Lean, J.M. Picone, J.T. Mariska, G. Joyce, D.L. Judge, S.E. Thonnard, K.F. Dymond, and S.A. Budzien,
Ionospheric and dayglow responses to the radiative phase of the Bastille Day flare,
Geophys. Res. Lett., 29, 10.1029/2001GL013956, 2002.

Huba, J.D., G. Joyce, and J.A. Fedder,
Simulation study of mid-latitude ionosphere fluctuations observed at Millstone Hill,
Geophys. Res. Lett., 30(18), 1943, doi:10.1029/2003GL18018, 2003.

Swisdak, M., J.D. Huba, G. Joyce, and C.-S. Huang,
Simulation study of a positive storm phase observed at Millstone Hill,
Geophys. Res. Lett., 33, L02104, doi:10.1029/2005GL024973, 2005.

Hysell, D.L., F.S. Rodrigues, J.L. Chau, and J.D. Huba,
Full profile incoherent scatter analysis at Jicamarca,
Ann. Geophys., 26, 59, 2008.

Krall, J., J.D. Huba, and J.A. Fedder,
Simulation of field-aligned H+ and He+ dynamics during late-stage plasmasphere refilling
Ann. Geophys., 26, 1507, 2008.